HGH is a performance-enhancing drug and has been banned by the NFL since 2011, although they only started testing for it in 2014.
Manning has denied any wrongdoing.
The report, which will air on Al-Jazeera on Sunday night, also links Green Bay Packers Mike Neal, Julius Peppers and Clay Matthews to the clinic.
It centers around pharmacist Charlie Sly, who allegedly supplied the drugs through an Indianapolis anti-aging clinic he worked at from 2011-13.
The report links several other athletes to HGH and other drugs, including Green Bay Packers linebacker Mike Neal, who allegedly introduced teammates Julius Peppers and others to Sly.